Soil acidification regulates the mobility of aluminum (Al) and manganese (Mn), thereby affecting legumes growth. Bioenergy by-products (BBP) including biochar, bottom ash and biogas slurry, can mitigate soil metal toxicity in acidic soils; however, the precise impacts of these amendments in soil-plant system remains unknown. Therefore, different treatments of BBP namely Control (T1), Biogas slurry (T2), Bottom ash (T3), Biochar (T4), Biogas slurry with bottom ash (T5), Biogas slurry with biochar (T6), Bottom ash with biochar (T7), and Biochar along with bottom ash and biogas slurry (T8) were used to mitigate the bioavailability and toxicity of Al and Mn. Results revealed that T8 reduced Al and Mn content by 63 % and 78 % in soil and 64 % and 65 % in soybean plants, respectively. Notably, T8 mitigates oxidative damage and improves rubisco activity, photosynthetic efficiency, and antioxidant activities as compared to other treatments. Furthermore, Transmission electron microscopy (TEM) shows that cell structure restoration was obvious under T6 and T8 than that of other treatments. The antioxidant genes (GmSOD, GmCAT1, and GmPOD1) and photosynthesis genes (GmRbcS and GmRCA beta) expressions were upregulated in T7 and T8 than that of other treatments. Our correlations analysis shows that BBP improved soil organic matter and further enhanced the availability of NO3-, P, and K in the soil. Furthermore, increased soil pH by BBP significantly decreased the NH4+ availability in the soil. In conclusion, our study demonstrates that BBP can enhance soybean physiological characteristics by modulating soil pH and improving nutrient availability.

The development of microbial chassis strains with high rare earth element (REE) tolerance is critical for the advancement of new metal biomining and bioprocessing technologies. In this study, we present a mechanistic understanding of how hyperacidophilic bioleaching organism Acidithiobacillus ferrooxidans resists REE-mediated damage at concentrations of REEs as high as 100 mM, while mesophilic Escherichia coli BL21 is significantly inhibited by far lower concentrations of REEs (IC50 between similar to 5 mu M and similar to 140 mu M depending on the element). Using light microscopy to document physiological changes and fluorescent probes to quantify membrane quality, we prove that cell surface interactions explain REE toxicity and demonstrate its reversibility through the addition of chelators. Removal of the A. ferrooxidans outer membrane and cell wall confers REE sensitivity comparable to that of E. coli, corroborating the importance of the outer membrane surface. To conclude, we present a model of differential REE sensitivity in the two strains tested, with implications for industrial metal bioprocessing. IMPORTANCE Demand for rare earth elements (REEs), a technologically critical group of metals, is rapidly increasing (US Geological Survey, 2024. Mineral commodity summaries. Reston, VA). To expand the supply chain without creating environmentally hazardous conditions, there is growing interest in the application of bioprocessing and bioextraction techniques to REE mining and separation. While REE toxicity has been demonstrated in Escherichia coli and other mesophilic neutrophiles, the effect of REEs on organisms currently used in metal bioleaching has been less studied. We present physiological evidence suggesting that REEs damage the outer membrane of E. coli, resulting in growth inhibition that is reversible by chelation. In contrast, Acidithiobacillus ferrooxidans tolerates saturating REE concentrations without apparent inhibition. This study fills gaps in the rapidly expanding body of literature surrounding REE's impact on microbial physiology. Furthermore, A. ferrooxidans resistance to REEs at saturating concentrations (50-100 mM at pH 1.6) is unprecedented in the literature and demonstrates the potential utility of this organism in REE biotechnology.

This study evaluated the physiological responses, hormonal signaling, osmotic and nutrient levels, as well as the performance of essential oils, antioxidant enzymes, and secondary metabolites in Lavender plants subjected to chromium and fluoride toxicity and biochar application. The findings indicated that the administration of raw and especially multiple-chemical engineered biochars decreased fluoride (about 16-40%) and chromium (39-60%) levels in Lavender leaves, whereas raised CEC and soil pH, nitrogen (10-37%), potassium (20-47%), phosphorus (10-60%), magnesium (30-49%), calcium (20-50%), zinc (39-240%), iron (40-120%), plant biomass, and photosynthetic pigments of Lavender plant leaves under toxic fluoride and chromium conditions. The treatments with multiple-chemical engineered biochars decreased the osmotic stress and osmolyte concentration (carbohydrates, soluble proteins, and proline) in the leaves of Lavender plants. Both raw and multiple-chemical engineered biochars significantly enhanced the water content of plant leaves, reaching up to 10% under toxic circumstances. Moreover, these treatments decreased the synthesis of stress hormones such as jasmonic acid (4-17%), salicylic acid (29-49%), and abscisic acid (30-66%), while increasing the production of Indole-3-acetic acid (IAA) (15-29%) in Lavender plants subjected to chromium and fluoride stress. The use of multiple-chemical engineered biochars showed notable efficacy in enhancing antioxidant enzyme's activity against oxidative damage induced by metal toxicity and decreasing proline accumulation. Maximum concentrations of linalyl acetate, borneol, camphor, and linalool were achieved under fluoride and chromium stress conditions by metaphosphoric acid-engineered biochar. Multiple-chemical engineered biochars application can be inferred as valuable approach to enhance both the quality and quantity of lavender essential oil under conditions of fluoride and chromium-induced stress.

This study aimed to examine the effects of aluminum (Al) stress on the leaves of Shatian pomelo (Citrus maxima Shatian Yu) and its underlying response mechanisms. Leaf phenotype analysis, physiological response index determination, transcriptome analysis, and genome verification were employed to investigate the effects of Al toxicity in detail. Al toxicity stress inhibited leaf growth and development, reducing leaf area, girth, and both dry and fresh weights. Antioxidant enzyme activity and soluble protein content in leaves significantly increased with rising Al stress levels. Additionally, Al toxicity caused an accumulation of Al ions in leaves and a decline in boron, magnesium, calcium, manganese, and iron ion content. RNA sequencing identified 4868 differentially expressed genes (DEGs) under 0 mM (Control) and 4 mM (Al stress) conditions, with 1994 genes upregulated and 2874 downregulated, indicating a complex molecular regulatory response. These findings were further validated by real-time quantitative PCR (qPCR). The results provide critical insights into the molecular mechanisms of Shatian pomelo leaf response to Al toxicity and offer a theoretical basis and practical guidance for improving citrus productivity in acidic soils.

Heavy metal contamination in water and soil presents a growing global issue that poses significant risks to environmental integrity and human well-being. Various heavy metals, including arsenic (As), lead (Pb), mercury (Hg), cadmium (Cd), and chromium (Cr), contaminate ecosystems. These metals enter the environment through both natural processes and human activities such as coal mining, leather production, metal processing, agriculture, and industrial waste disposal. With their high toxicity and tendency to accumulate in organisms, heavy metals induce oxidative stress in cells, resulting in organelle damage. This toxicity can lead to genetic mutations and histone alterations. Given the severe effects of heavy metals, urgent actions are required to eliminate them from polluted soil and water. While physicochemical techniques like membrane filtration, precipitation, oxidation, and reduction exist, they have limitations. Hence, there is a pressing need to devise environmentally friendly and cost-efficient approaches for heavy metal removal. This article examines heavy metal contamination in water and soil, its adverse impacts, and the cleanup of heavy metals using eco-friendly methods. [GRAPHICAL ABSTRACT]

Pesticides including insecticides are often applied to prevent distortion posed by plant insect pests. However, the application of these chemicals detrimentally affected the non-target organisms including soil biota. Fipronil (FIP), a broad-spectrum insecticide, is extensively used to control pests across the globe. The frequent usage calls for attention regarding risk assessment of undesirable effects on non-target microorganisms. Here, laboratory-based experiments were conducted to assess the effect of FIP on plant-beneficial bacteria (PBB); Rhizobium leguminosarum (Acc. No. PQ578652), Azotobacter salinestris (Acc. No. PQ578649) and Serratia marcescens (Acc. No. PQ578651). PBB synthesized growth regulating substances were negatively affected by increasing fipronil concentrations. For instance, at 100 mu g FIPmL-1, a decrease in indole-3-acetic acid (IAA) synthesis by bacterial strains followed the order: A. salinestris (95.6%) S. marcescens (91.6%) > R. leguminosarum (87%). Also, exposure of bacteria cells to FIP hindered the growth and morphology of PBB observed as distortion, cracking, and aberrant structure under scanning electron microscopy (SEM). Moreover, FIP-treated and propidium iodide (PI)-stained bacterial cells displayed an insecticide dose-dependent increase in cellular permeability as observed under a confocal laser microscope (CLSM). Colony counts (log(10) CFU mL(-1)) and growth of A. salinestris was completely inhibited at 150 mu g FIPmL-1. The surface adhering ability (biofilm formation) of PBB was also disrupted/inhibited in a FIP dose-related manner. The respiration loss due to FIP was coupled with a reduction in population size. Fipronil at 150 mu gmL(-1) decreased cellular respiration in A. salinestris (72%) S. marcescens (53%) and R. leguminosarum (85%). Additionally, biomarker enzymes; lactate dehydrogenase (LDH), lipid peroxidation (LPO), and oxidative stress (catalase; CAT) induced by FIP represented significant (p <= 0.05) toxicity towards PBB strains. Conclusively, fipronil suggests a toxic effect that emphasizes their careful monitoring in soils before application and their optimum addition in the soil-plant system. It is high time to prepare both target-specific and slow-released agrochemical formulation for crop protection with concurrent safeguarding of soils.

Aluminium (Al) stress is the second-leading abiotic stress on crops. An improved understanding of the response mechanisms of plants to Al stress will provide scientific guidance for enhancing the crops' tolerance to Al stress. In this study, Al stress (50-200 mu M AlCl3) caused visible damage to broad bean (Vicia faba L.) roots rather than shoots, which was attributed to Al accumulation and distribution in different tissues. Root transcriptomic analysis revealed that Al stress altered cell wall properties by downregulating lignin synthesis and several xyloglucan endotransglucosylase/hydrolase-, expansin- and peroxidase (POD)-encoding genes, which likely weakened cell extensibility to inhibit root growth. Additionally, Al stress impeded reactive oxygen species scavenging pathways involving POD activity and flavonoid biosynthesis, leading to oxidative damage characterised by malondialdehyde accumulation. These results indicate that optimising cell wall properties and/or enhancing antioxidant processes are crucial for alleviating Al toxicity to broad beans. Interestingly, exogenous application (500 and 1000 mu M) of the flavonoid apigenin effectively alleviated Al toxicity in broad bean roots by partially improving the total antioxidant capacity of the roots. This study contributes to understanding the interaction between plants and Al and provides new strategies to alleviate Al toxicity in crops.

Biochar has been recognised as an efficacious amendment for the remediation of compound heavy metal contamination in soil. However, the molecular mechanism of biochar-mediated tolerance to compound heavy metal toxicity in cotton is unknown. The objective of this research was to investigate the positive impact of biochar (10 g.kg(-1)) on reducing damage caused by compound heavy metals (Cd, Pb, and As) in cotton ( Gos- sypium hirsutum L.). The results revealed that biochar reduced Cd concentrations by 24.9 % (roots), and decreased Pb concentrations by 37.1 % (roots) and 59.53 % (stems). Biochar maintained ionic homoeostasis by regulating the expression of metal transporter proteins such as ABC, HIPP, NRAMP3, PCR, and ZIP, and genes related to the carbon skeleton and plasma membrane. Biochar also downregulated genes related to photosynthesis, thereby increasing photosynthesis. Biochar re-established redox homoeostasis in cotton by activating signal transduction, which regulated the activity of the enzymes POD, SOD, and CAT activity; and the expression of related genes. This research revealed the molecular mechanism by which biochar confers resistance to the harmful effects of compound heavy metal toxicity in cotton. The application of biochar as a soil amendment to neutralise the toxicity of compound heavy metals is recommended for cash crop production.

Fly ash (FA) deposition originating from power stations and unprotected dumpsites, have been found to affect plant communities, potentially causing environmental degradation and food chain contamination. An analysis of plant composition, heavy metal concentration in plants and soil within 40 kilometers of the Morupule dumpsite was conducted to evaluate the impact of FA disposal. In addition, risks to the ruminants grazing in this area, were assessed. The windward transect had significantly higher species diversity and richness than the leeward transect, especially in areas closer to the dumpsite. This could be attributed to the inability of some plants to tolerate higher concentrations of toxic metal and alkalinity in areas near the dumpsite. In this study, average concentrations in plants of Cr (546.11 mg kg-1), Mn (905.69 mg kg-1), and Cu (128 mg kg-1) were above toxicity levels of 75-100 mg kg-1 for Cr, 400 mg kg-1 for Mn, and 100 mg kg-1 for Cu. Although the quantities of these metals were above the maximum allowable daily consumption, calculations of the daily plant intake by grazing animals in this area revealed a potential danger of exposure to Cr and Cu. Particularly in areas that were nearest to the FA dumpsite, ruminants grazing on the leeward transect were more exposed to Cu than Cr toxicity. Overall, it was found that FA deposition damaged the plant community and put grazing ruminants at greater danger. However, more investigation is required to pinpoint the precise level of hazardous metals found in the grazing animals in this area.

There is growing concern that sprayed neonicotinoid pesticides (neonics) persist in mixed forms in the environmental soil and water systems, and these concerns stem from reports of increase in both the detection frequency and concentration of these pollutants. To confirm the toxic effects of neonics, we conducted toxicity tests on two neonics, clothianidin (CLO) and imidacloprid (IMD), in embryos of zebrafish. Toxicity tests were performed with two different types of mixtures: potential mixture compounds and realistic mixture compounds. Potential mixtures of CLO and IMD exhibited synergistic effects, in a dose-dependent manner, in zebrafish embryonic toxicity. Realistic mixture toxicity tests that are reflecting the toxic effects of mixture in the aquatic environment were conducted with zebrafish embryos. The toxicity of the CLO and IMD mixture at environmentally-relevant concentrations was confirmed by the alteration of the transcriptional levels of target genes, such as cell damage linked to oxidative stress response and thyroid hormone synthesis related to zebrafish embryonic development. Consequently, the findings of this study can be considered a strategy for examining mixture toxicity in the range of detected environmental concentrations. In particular, our results will be useful in explaining the mode of toxic action of chemical mixtures following short-term exposure. Finally, the toxicity information of CLO and IMD mixtures will be applied for the agricultural environment, as a part of chemical regulation guideline for the use and production of pesticides.