Phytoremediation assisted by endophytic bacteria is a promising strategy to enhance the remediation efficiency of heavy metals in contaminated soil. In this study, the capacity and role of the endophytic Bacillus sp. D2, previously isolated from Commelina communis growing near a copper (Cu) mine, in assisting the phytoremediation were evaluated. Results showed that inoculation of Bacillus sp. D2 significantly enhanced the biomass production of C. communis by 131.06% under high level of Cu stress. Additionally, the oxidative damages caused by Cu toxicity in C. communis tissues were alleviated as evidenced by significant reductions in malondialdehyde (MDA), superoxide anion (O2 center dot-) and proline content following Bacillus sp. D2 inoculation. Meanwhile, the activities of antioxidant enzymes in plant leaves presented upward trends after Bacillus sp. D2 inoculation. Notably, Bacillus sp. D2 inoculation significantly decreased Cu uptake and translocation by C. communis, while enhancing the Cu stabilization in contaminated soils. Furthermore, soil enzyme activities (acid phosphatase, catalase, and urease), as well as the richness of soil bacterial communities in Cu-contaminated soil increased following Bacillus sp. D2 inoculation. Importantly, the inoculation specifically augmented the relative abundance of key bacterial taxa (including Pseudomonas and Sphingomonadaceae) in the rhizosphere soil, which was positively correlated with soil nutrients cycling and plant growth. Our findings suggest that the endophytic strain Bacillus sp. D2 can strengthen the phytostabilization efficiency of Cu by C. communis through its beneficial effects on plant physio-biochemistry, soil quality and bacterial microecology, which provides a basis for the relative application to Cu-contaminated soils.

AimsPlant yield, nitrate accumulation risk, and the potential pathogenic microorganism are critical parameters in evaluating soil fertility management. The nitrate content in the soil-plant system is substantially driven by soil abiotic properties and soil and endophytic microorganisms which are also potential resources of plant pathogenicity. This study aimed to quantify the effects of citric acid (CA), alone or with dicyandiamide (DCD) and 3, 4-dimethylpyrazole phosphate (DMPP), on plant yield, nitrate accumulation risk and potential pathogenicity of soil-plant system.MethodsOur study contained six treatments: (1) control without CA or nitrification inhibitor (CK); (2) sole DCD application treatment (DCT); (3) sole DMPP application treatment (DMT); (4) sole CA application treatment (CAT); (5) CA + DCD application treatment (CADCT) and (6) CA + DMPP application treatment (CADMT). The nitrate contents, plant yields, and bacterial communities in soil and plant samples were analyzed.ResultsThe CA significantly reduced soil nitrate contents by 29.8%. Relative to sole CA application, extra nitrification inhibitor application significantly enhanced plant yields and decreased plant nitrate contents. The exclusive CA application could significantly stimulate the soil Actinobacteriota but reduce the soil pathogenicity, but extra nitrification inhibitors led to higher potential soil pathogenicity.ConclusionsThe single CA application could decrease nitrate accumulation risk and mitigating potential soil pathogenicity damage, while extra nitrification inhibitor application would intensify the performances of CA in decreasing plant nitrate accumulation but potentially enhancing the pathogenic. It deserves to emphasize the consideration of the tradeoffs among plant yield, nitrate accumulation risk, and potential pathogen risk when evaluating the effects of CA and nitrification inhibitors.

BackgroundDue to global warming and gradual climate change, plants are subjected to a wide range of environmental stresses, adversely affecting plant growth and production worldwide. Plants have developed various mechanisms to overpower these abiotic stresses, including salt stress, drought, and high light intensity. Apart from their own defense strategies, plants can get help from the beneficial endophytic bacteria inside host plants and assist them in enduring severe growth conditions. A previously isolated plant endophytic bacteria, Burkholderia seminalis 869T2, from vetiver grass can produce auxin, synthesize siderophore, and solubilize phosphate. The B. seminalis 869T2 can colonize inside host plants and increase the growth of bananas, Arabidopsis, and several leafy vegetables.ResultsWe further demonstrated that different growth parameters of Arabidopsis and pak choi plants were significantly increased after inoculating the B. seminalis 869T2 under normal, salt, and drought stress conditions compared to the mock-inoculated plants. Both transcriptome analysis and quantitative real-time PCR results showed that expression levels of genes related to phytohormone signal transduction pathways, including auxin, gibberellin, cytokinin, and abscisic acid were altered in Arabidopsis plants after inoculated with the strain 869T2 under salt stress, in comparison to the mock-inoculated control with salt treatments. Furthermore, the accumulation levels of hydrogen peroxide (H2O2), electrolyte leakage (EL), and malondialdehyde (MDA) were lower in the 869T2-inoculated Arabidopsis and pak choi plants than in control plants under salt and drought stresses.ConclusionsThe plant endophytic bacterium strain B. seminalis 869T2 may affect various phytohormone responses and reduce oxidative stress damage to increase salt and drought stress tolerances of host plants.

Endophytic bacteria derived from metal hyperaccumulators have demonstrated potential for improving copper (Cu) remediation in host plants; however, their potential application in non-host crops remains unclear. In this study, endophytic bacteria isolated from Commelina communis growing in mining areas and their mitigation effects on Cu toxicity in non-host rice were comprehensively evaluated. Among the isolated endophytes, Bacillus sp. D2 exhibited the highest Cu resistance, producing indole-3-acetic acid (IAA) at a concentration of 0.93 mg/L and exhibiting ACC deaminase activity of 13.88 mu mol/mg & sdot;h under 200 mg/L Cu stress. Pot-experiment results revealed that Bacillus sp. D2 addition significantly increased the biomass and lengths of shoots under Cu stress conditions by 47.6% and 14.2%, respectively. Furthermore, Bacillus sp. D2 inoculation significantly reduced oxidative damage, enhanced antioxidant responses, and modulated plant hormone levels in Cu-exposed rice. Notably, Bacillus sp. D2 inoculation substantially decreased the upward translocation of Cu from underground roots to aboveground tissues. Moreover, Bacillus sp. D2 effectively alleviated Cu toxicity in rice plants by regulating the expression levels of genes involved in antioxidant systems (tAPx, Csd2, and FeSOD1), Cu transporters (AtPDR8 and HMA3), as well as metallothionein (MT2c). These results highlight the value of Bacillus sp. D2 as a bioinoculant for improving crop growth while reducing the risks associated with copper contamination in naturally Cu-contaminated soils.

The level of cadmium (Cd) accumulation in orchard soils is increasing, and excess Cd will cause serious damage to plants. Melatonin is a potent natural antioxidant and has a potential role in alleviating Cd stress. This study aimed to investigate the effects of exogenous melatonin on a root endophyte bacteria community and metabolite composition under Cd stress. The results showed that melatonin significantly scavenged the reactive oxygen species and restored the photosynthetic system (manifested by the improved photosynthetic parameters, total chlorophyll content and the chlorophyll fluorescence parameters (Fv/Fm)), increased the activity of antioxidant enzymes (the activities of catalase, superoxide dismutase, peroxidase and ascorbate oxidase) and reduced the concentration of Cd in the roots and leaves of apple plants. High-throughput sequencing showed that melatonin increased the endophytic bacterial community richness significantly and changed the community structure under Cd stress. The abundance of some potentially beneficial endophytic bacteria (Ohtaekwangia, Streptomyces, Tabrizicola and Azovibrio) increased significantly, indicating that the plants may absorb potentially beneficial microorganisms to resist Cd stress. The metabolomics results showed that melatonin significantly changed the composition of root metabolites, and the relative abundance of some metabolites decreased, suggesting that melatonin may resist Cd stress by depleting root metabolites. In addition, co-occurrence network analysis indicated that some potentially beneficial endophytes may be influenced by specific metabolites. These results provide a theoretical basis for studying the effects of melatonin on the endophytic bacterial community and metabolic composition in apple plants.