An anomalous warm weather event in the Antarctic McMurdo Dry Valleys on 18 March 2022 created an opportunity to characterize soil biota communities most sensitive to freeze-thaw stress. This event caused unseasonal melt within Taylor Valley, activating stream water and microbial mats around Canada Stream. Liquid water availability in this polar desert is a driver of soil biota distribution and activity. Because climate change impacts hydrological regimes, we aimed to determine the effect on soil communities. We sampled soils identified from this event that experienced thaw, nearby hyper-arid areas, and wetted areas that did not experience thaw to compare soil bacterial and invertebrate communities. Areas that exhibited evidence of freeze-thaw supported the highest live and dead nematode counts and were composed of soil taxa from hyper-arid landscapes and wetted areas. They received water inputs from snowpacks, hyporheic water, or glacial melt, contributing to community differences associated with organic matter and salinity gradients. Inundated soils had higher organic matter and lower conductivity (p < .02) and hosted the most diverse microbial and invertebrate communities on average. Our findings suggest that as liquid water becomes more available under predicted climate change, soil communities adapted to the hyper-arid landscape will shift toward diverse, wetted soil communities.

Background and AimsMicroorganisms are essential for carbon and nitrogen cycling in the active layer of permafrost regions, but the distribution and controlling factors of microbial functional genes across different land cover types and soil depths remain poorly understood. This gap hinders accurate predictions of carbon and nitrogen cycling dynamics under climate change. This study aims to explore how land cover type and soil depth influence microbial functional gene distribution in the Qinghai-Tibet Plateau's permafrost regions.MethodsSoil samples (0-50 cm) were collected from alpine wet meadows, alpine meadows, and alpine steppes. We analyzed the samples for physicochemical properties, microbial amplicon sequencing, and metagenomic sequencing. Correlation analyses were conducted between microbial community structure, functional genes, and environmental factors to identify the drivers of microbial carbon and nitrogen cycling.ResultsBacterial richness was 6.03% lower in steppe soils compared to wet meadow soils. Steppe soils exhibited the highest aerobic respiration potential, while deeper wet meadow soils had enhanced anaerobic carbon fixation potential and a higher abundance of carbon decomposition-related genes. Nitrogen assimilation was highest in steppe surface soils, whereas denitrification and ammonification were greatest in wet meadow soils. Carbon cycling potential was influenced by total soil carbon, nitrogen, phosphorus, and belowground biomass, while nitrogen cycling was driven by belowground biomass, soil moisture, and pH.ConclusionOur findings underscore the role of environmental factors in microbial functional gene distribution, providing new insights for modeling carbon and nitrogen cycling in alpine permafrost ecosystems under climate change.

Soil microorganisms play a pivotal role in the biogeochemical cycles of alpine meadow ecosystems, especially in the context of permafrost thaw. However, the mechanisms driving microbial community responses to environmental changes, such as variations in active layer thickness (ALT) of permafrost, remain poorly understood. This study utilized next-generation sequencing to explore the composition and co-occur rence patterns of soil microbial communities, focusing on bacteria and micro-eukaryotes along a permafrost thaw gradient. The results showed a decline in bacterial alpha diversity with increasing permafrost thaw, whereas micro-eukaryotic diversity exhibi ted an opposite trend. Although changes in microbial community composition were observed in permafrost and seasonally frozen soils, these shifts were not statistically significant. Bacterial communities exhibited a greater differentiation between frozen and seasonally frozen soils, a pattern not mirrored in eukaryotic communities. Linear discriminant analysis effect size analysis revealed a higher number of potential biomark ers in bacterial communities compared with micro-eukaryotes. Bacterial co-occurrence networks were more complex, with more nodes, edges, and positive linkages than those of micro-eukaryotes. Key factors such as soil texture, ALT, and bulk density significantly influenced bacterial community structures, particularly affecting the relative abundan ces of the Acidobacteria, Proteobacteria, and Actinobacteria phyla. In contrast, fungal communities (e.g., Nucletmycea, Rhizaria, Chloroplastida, and Discosea groups) were more affected by electrical conductivity, vegetation coverage, and ALT. This study highlights the distinct responses of soil bacteria and micro-eukaryotes to permafrost thaw, offering insights into microbial community stability under global climate change.

Freeze-thaw (FT) events profoundly perturb the biochemical processes of soil and water in mid- and high-latitude regions, especially the riparian zones that are often recognized as the hotspots of soil-water interactions and thus one of the most sensitive ecosystems to future climate change. However, it remains largely unknown how the heterogeneously composed and progressively discharged meltwater affect the biochemical cycling of the neighbor soil. In this study, stream water from a valley in the Chinese Loess Plateau was frozen at -10 degrees C for 12 hours, and the meltwater (at +10 degrees C) progressively discharged at three stages (T1 similar to T3) was respectively added to rewet the soil collected from the same stream bed (Soil+T1 similar to Soil+T3). Our results show that: (1) Approximately 65% of the total dissolved organic carbon and 53% of the total NO3--N were preferentially discharged at the first stage T1, with enrichment ratios of 1.60 similar to 1.94. (2) The dissolved organic matter discharged at T1 was noticeably more biodegradable with significantly lower SUVA(254) but higher HIX, and also predominated with humic-like, dissolved microbial metabolite-like, and fulvic acid-like components. (3) After added to the soil, the meltwater discharged at T1 (e.g., Soil+T1) significantly accelerated the mineralization of soil organic carbon with 2.4 similar to 8.07-folded k factor after fitted into the first-order kinetics equation, triggering 125 similar to 152% more total CO2 emissions. Adding T1 also promoted significantly more accumulation of soil microbial biomass carbon after 15 days of incubation, especially on the FT soil. Overall, the preferential discharge of the nutrient-enriched meltwater with more biodegradable DOM components at the initial melting stage significantly promoted the microbial growth and respiratory activities in the recipient soil, and triggered sizable CO2 emission pulses. This reveals a common but long-ignored phenomenon in cold riparian zones, where progressive freeze-thaw can partition and thus shift the DOM compositions in stream water over melting time, and in turn profoundly perturb the biochemical cycles of the neighbor soil body.

Soil freeze-thaw cycles (FTCs) are common in temperate agricultural ecosystems during the non-growing season and are progressively influenced by climate change. The impact of these cycles on soil microbial communities, crucial for ecosystem functioning, varies under different agricultural management practices. Here, we investigated the dynamic changes in soil microbial communities in a Mollisol during seasonal FTCs and examined the effects of stover mulching and nitrogen fertilization. We revealed distinct responses between bacterial and fungal communities. The dominant bacterial phyla reacted differently to FTCs: for example, Proteobacteria responded opportunistically, Actinobacteria, Acidobacteria, Choroflexi and Gemmatimonadetes responded sensitively, and Saccharibacteria exhibited a tolerance response. In contrast, the fungal community composition remained relatively stable during FTCs, except for a decline in Glomeromycota. Certain bacterial OTUs acted as sensitive indicators of FTCs, forming keystone modules in the network that are closely linked to soil carbon, nitrogen content and potential functions. Additionally, neither stover mulching nor nitrogen fertilization significantly influenced microbial richness, diversity and potential functions. However, over time, more indicator species specific to these agricultural practices began to emerge within the networks and gradually occupied the central positions. Furthermore, our findings suggest that farming practices, by introducing keystone microbes and changing interspecies interactions (even without changing microbial richness and diversity), can enhance microbial community stability against FTC disturbances. Specifically, higher nitrogen input with stover removal promotes fungal stability during soil freezing, while lower nitrogen levels increase bacterial stability during soil thawing. Considering the fungal tolerance to FTCs, we recommend reducing nitrogen input for manipulating bacterial interactions, thereby enhancing overall microbial resilience to seasonal FTCs. In summary, our research reveals that microbial responses to seasonal FTCs are reshaped through land management to support ecosystem functions under environmental stress amid climate change.

Soil organic carbon (SOC) rapidly accumulates during ecosystem primary succession in glacier foreland. This makes it an ideal model for studying soil carbon sequestration and stabilization, which are urgently needed to mitigate climate change. Here, we investigated SOC dynamics in the Kuoqionggangri glacier foreland on the Tibetan Plateau. The study area along a deglaciation chronosequence of 170-year comprising three ecosystem succession stages, including barren ground, herb steppe, and legume steppe. We quantified amino sugars, lignin phenols, and relative expression of genes associated with carbon degradation to assess the contributions of microbial and plant residues to SOC, and used FT-ICR mass spectroscopy to analyze the composition of dissolved organic matter. We found that herbal plant colonization increased SOC by enhancing ecosystem gross primary productivity, while subsequent legumes development decreased SOC, due to increased ecosystem respiration from labile organic carbon inputs. Plant residues were a greater contributor to SOC than microbial residues in the vegetated soils, but they were susceptible to microbial degradation compared to the more persistent and continuously accumulating microbial residues. Our findings revealed the organic carbon accumulation and stabilization process in early soil development, which provides mechanism insights into carbon sequestration during ecosystem restoration under climate change.

Insights into the impacts of freeze-thaw processes on soil microorganisms and their related functions in permafrost regions are crucial for assessing ecological consequences imposed by the shifts in freeze-thaw patterns. Through in-situ investigations on seasonal freeze-thaw processes in the active layer of permafrost in the Qinghai-Tibet Plateau, we found that microbial richness was higher and positively correlated with soil multifunctionality during the freeze-thaw stage (freezing and thawing periods) compared to the non-freeze-thaw stage (completely frozen and thawed periods). This relationship resulted from the higher microbial stability, which was highly consistent with the lower complexity, more keystone taxa, and greater robustness of networks. Although freeze-thaw strength exacerbated the greenhouse effect on climate, it was alleviated by the enhancement of diversity-soil multifunctionality relationship. These findings have substantial implications for exploring the responses of microbial-mediated soil multifunctionality and greenhouse effect in alpine permafrost to more drastic variations of freeze-thaw processes under future warming.

Snow distribution has been altered over the past decades under global warming, with a significant reduction in duration and extent of snow cover and an increase in unprecedented snowstorms across large areas in cold regions. The altered snow conditions are likely to have immediate (in winter) and carry-over or legacy (which an extended effect might continue in the following spring, summer and autumn) impacts on soil processes and functioning, but a quantification of the legacy effect of snow coverage alternation is still lacking. Furthermore, studies investigating the effect of snow cover changes on soil respiration, soil carbon pools and microbial activity are increasing, but contrasting results of different studies makes it difficult to assess the overall effect of snow cover changes and the underlying mechanisms, thus a systematic and comprehensive meta-analysis is required. In this study, we synthesized the results from 60 papers based on field snow manipulation experiments and conducted a meta-analysis to evaluate immediate and prolonged effects on eight variables related to soil carbon dynamics and microbial activity to snow coverage alternation. Results showed that snow removal had no significant effect on soil respiration, but increased dissolved organic carbon (DOC) (11.5%) and fungal abundance (32.0%). By contrast, snow addition significantly increased soil respiration (16.3%) and microbial biomass carbon (MBC) (6.6%). Snow addition had immediate and prolonged impacts on soil carbon dynamics and microbial activity lasting from winter to the following autumn, whereas an effect of snow removal on total organic carbon (TOC) and DOC was detectable only in the following spring. Snow depth, ecosystem and soil types determined the extent of the impact of snow treatments on soil respiration, DOC, MBC and microbial biomass nitrogen (MBN). Our findings provide critical insights into understanding how changes in snow coverage affect soil respiration and microbial activity. We suggest future field-based experiments to enhance our understanding the effect of climate change on soil processes and functioning in the winter and the following seasons.

The active layer is the portion of soil overlaying the permafrost that freezes and thaws seasonally. It is a harsh habitat in which a varied and vigorous microbial population thrives. The high-altitude active layer soil in northern India is a unique and important cryo-ecosystem. However, its microbiology remains largely unexplored. It represents a unique reservoir for microbial communities with adaptability to harsh environmental conditions. In the Changthang region of Ladakh, the Tsokar area is a high-altitude permafrost-affected area situated in the southern part of Ladakh, at a height of 4530 m above sea level. Results of the comparison study with the QTP, Himalayan, Alaskan, Russian, Canadian and Polar active layers showed that the alpha diversity was significantly higher in the Ladakh and QTP active layers as the environmental condition of both the sites were similar. Moreover, the sampling site in the Ladakh region was in a thawing condition at the time of sampling which possibly provided nutrients and access to alternative nitrogen and carbon sources to the microorganisms thriving in it. Analysis of the samples suggested that the geochemical parameters and environmental conditions shape the microbial alpha diversity and community composition. Further analysis revealed that the cold-adapted methanogens were present in the Ladakh, Himalayan, Polar and Alaskan samples and absent in QTP, Russian and Canadian active layer samples. These methanogens could produce methane at slow rates in the active layer soils that could increase the atmospheric temperature owing to climate change.

1. Phosphorous (P) is essential for mediating plant and microbial growth and thus could impact carbon (C) cycle in permafrost ecosystem. However, little is known about soil P availability and its biological acquisition strategies in permafrost environment. 2. Based on a large-scale survey along a similar to 1000 km transect, combining with shotgun metagenomics, we provided the first attempt to explore soil microbial P acquisition strategies across the Tibetan alpine permafrost region. 3. Our results showed the widespread existence of microbial functional genes associated with inorganic P solubilization, organic P mineralization and transportation, reflecting divergent microbial P acquisition strategies in permafrost regions. Moreover, the higher gene abundance related to solubilization and mineralization as well as an increased ration of metagenomic assembled genomes (MAGs) carrying these genes were detected in the active layer, while the greater abundance of low-affinity transporter gene (pit) and proportions of MAGs harbouring pit gene were observed in permafrost deposits, illustrating a stronger potential for P activation in active layer but an enhanced P transportation potential in permafrost deposits. 4. Our results highlight multiple P-related acquisition strategies and their differences among various soil layers should be considered simultaneously to improve model prediction for the responses of biogeochemical cycles in permafrost ecosystems to climate change.