Climate change is rapidly transforming Arctic landscapes where increasing soil temperatures speed up permafrost thaw. This exposes large carbon stocks to microbial decomposition, possibly worsening climate change by releasing more greenhouse gases. Understanding how microbes break down soil carbon, especially under the anaerobic conditions of thawing permafrost, is important to determine future changes. Here, we studied the microbial community dynamics and soil carbon decomposition potential in permafrost and active layer soils under anaerobic laboratory conditions that simulated an Arctic summer thaw. The microbial and viral compositions in the samples were analyzed based on metagenomes, metagenome-assembled genomes, and metagenomic viral contigs (mVCs). Following the thawing of permafrost, there was a notable shift in microbial community structure, with fermentative Firmicutes and Bacteroidota taking over from Actinobacteria and Proteobacteria over the 60-day incubation period. The increase in iron and sulfate-reducing microbes had a significant role in limiting methane production from thawed permafrost, underscoring the competition within microbial communities. We explored the growth strategies of microbial communities and found that slow growth was the major strategy in both the active layer and permafrost. Our findings challenge the assumption that fast-growing microbes mainly respond to environmental changes like permafrost thaw. Instead, they indicate a common strategy of slow growth among microbial communities, likely due to the thermodynamic constraints of soil substrates and electron acceptors, and the need for microbes to adjust to post-thaw conditions. The mVCs harbored a wide range of auxiliary metabolic genes that may support cell protection from ice formation in virus-infected cells.IMPORTANCE As the Arctic warms, thawing permafrost unlocks carbon, potentially accelerating climate change by releasing greenhouse gases. Our research delves into the underlying biogeochemical processes likely mediated by the soil microbial community in response to the wet and anaerobic conditions, akin to an Arctic summer thaw. We observed a significant shift in the microbial community post-thaw, with fermentative bacteria like Firmicutes and Bacteroidota taking over and switching to different fermentation pathways. The dominance of iron and sulfate-reducing bacteria likely constrained methane production in the thawing permafrost. Slow-growing microbes outweighed fast-growing ones, even after thaw, upending the expectation that rapid microbial responses to dominate after permafrost thaws. This research highlights the nuanced and complex interactions within Arctic soil microbial communities and underscores the challenges in predicting microbial response to environmental change. As the Arctic warms, thawing permafrost unlocks carbon, potentially accelerating climate change by releasing greenhouse gases. Our research delves into the underlying biogeochemical processes likely mediated by the soil microbial community in response to the wet and anaerobic conditions, akin to an Arctic summer thaw. We observed a significant shift in the microbial community post-thaw, with fermentative bacteria like Firmicutes and Bacteroidota taking over and switching to different fermentation pathways. The dominance of iron and sulfate-reducing bacteria likely constrained methane production in the thawing permafrost. Slow-growing microbes outweighed fast-growing ones, even after thaw, upending the expectation that rapid microbial responses to dominate after permafrost thaws. This research highlights the nuanced and complex interactions within Arctic soil microbial communities and underscores the challenges in predicting microbial response to environmental change.

Anticipated permafrost thaw in upcoming decades may exert significant impacts on forest soil nitrogen (N) dynamics. The rate of soil N mineralization (Nmin) plays a crucial role in determining soil N availability. Nevertheless, our understanding remains limited regarding how biotic and abiotic factors influence the Nmin of forest soil in response to permafrost thaw. In this study, we investigated the implications of permafrost thaw on Nmin within a hemiboreal forest based on a field investigation along the degree of permafrost thaw, having monitored permafrost conditions for eight years. The results indicate that permafrost thaw markedly decreased Nmin values. Furthermore, Nmin demonstrated positive associations with soil substrates (namely, soil organic carbon and soil total nitrogen), microbial biomass carbon and nitrogen, and soil moisture content. The decline in Nmin due to permafrost thaw was primarily attributed to the diminished quality and quantity of soil substrates rather than alterations in plant community composition. Collectively, our results underscore the pivotal role of soil substrate and microbial biomass in guiding forest soil N transformations in the face of climate-induced permafrost thaw.

Warming temperatures in continuous permafrost zones of the Arctic will alter both hydrological and geochemical soil conditions, which are strongly linked with heterotrophic microbial carbon (C) cycling. Heterogeneous permafrost landscapes are often dominated by polygonal features formed by expanding ice wedges: water accumulates in low centered polygons (LCPs), and water drains outward to surrounding troughs in high centered polygons (HCPs). These geospatial differences in hydrology cause gradients in biogeochemistry, soil C storage potential, and thermal properties. Presently, data quantifying carbon dioxide (CO2) and methane (CH4) release from HCP soils are needed to support modeling and evaluation of warming-induced CO2 and CH4 fluxes from tundra soils. This study quantifies the distribution of microbial CO2 and CH4 release in HCPs over a range of temperatures and draws comparisons to previous LCP studies. Arctic tundra soils were initially characterized for geochemical and hydraulic properties. Laboratory incubations at -2, +4, and +8 degrees C were used to quantify temporal trends in CO2 and CH4 production from homogenized active layer organic and mineral soils in HCP centers and troughs, and methanogen abundance was estimated from mcrA gene measurements. Results showed that soil water availability, organic C, and redox conditions influence temporal dynamics and magnitude of gas production from HCP active layer soils during warming. At early incubation times (2-9 days), higher CO2 emissions were observed from HCP trough soils than from HCP center soils, but increased CO2 production occurred in center soils at later times (>20 days). HCP center soils did not support methanogenesis, but CH4-producing trough soils did indicate methanogen presence. Consistent with previous LCP studies, HCP organic soils showed increased CO2 and CH4 production with elevated water content, but HCP trough mineral soils produced more CH4 than LCP mineral soils. HCP mineral soils also released substantial CO2 but did not show a strong trend in CO2 and CH4 release with water content. Knowledge of temporal and spatial variability in microbial C mineralization rates of Arctic soils in response to warming are key to constraining uncertainties in predictive climate models.

The aim of this work was to assess the biogeochemical role of riparian soils in the High Arctic to determine to what extent these soils may act as sources or sinks of carbon (C) and nitrogen (N). To do so, we compared two riparian areas that varied in riparian vegetation coverage and soil physical perturbation (i.e., thermo-erosion gully) in NE Greenland (74 degrees N) during late summer. Microbial soil respiration (0.4-3.2 mu mol CO2 m(-2) s(-1)) was similar to values previously found across vegetation types in the same area and increased with higher temperatures, soil column depth and soil organic C degradation. Riparian soils had low nitrate concentrations (0.02-0.64 mu g N-NO3- g(-1)), negligible net nitrification rates and negative net N mineralization rates (-0.58 to 0.33 mu g N g(-1) day(-1)), thus indicating efficient microbial N uptake due to low N availability. We did not find any effects of physical perturbation on soil respiration or on N processing, but the dissolved fraction of organic matter in the soil was one order of magnitude lower on the disturbed site. Overall, our results suggest that riparian soils are small N sources to high-Arctic streams and that a depleted dissolved organic C pool in disturbed soils may decrease exports to the adjacent streams under climate change projection.

Recent global warming models project a significant change in winter climate over the next few decades. The decrease in snowpack in the winter will decrease the heat insulation function of the snowpack, resulting in increased soil freeze-thaw cycles. Here, we examined the impact of winter freeze-thaw cycles on year-round dissolved nitrogen (N) and carbon (C) dynamics and their relationship with dissolved organic matter and microbial biomass in soil by conducting an in situ experimental reduction in snowpack. We investigated dissolved inorganic N (NH4+ and NO3-), dissolved organic N (DON), dissolved organic carbon (DOC), inorganic N leaching, soil microbial biomass, and microbial activities (mineralization and nitrification) in the surface soil of a northern hardwood forest located in Japan. Experimental snowpack reduction significantly increased the number of soil freeze-thaw cycles and soil frost depth. The NH4+ content of the surface soil was significantly increased by the amplified soil freeze-thaw cycles due to decreased snowpack, while the soil NO3- content was unchanged or decreased slightly. The gravimetric soil moisture, DON and DOC contents in soil and soil microbial biomass significantly increased by the snowpack removal in winter. Our results suggest that the amplified freeze-thaw cycles in soil increase the availability of DON and DOC for soil microbes due to an increase in soil freezing. The increases in both DON and DOC in winter contributed to the enhanced growth of soil microbes, resulting in the increased availability of NH4+ in winter from net mineralization following an increase in soil freeze-thaw cycles. Our study clearly indicated that snow reduction significantly increased the availability of dissolved nitrogen and carbon during winter, caused by increased soil water content due to freeze-thaw cycles in winter.

Decomposition of soil organic matter (SOM) in permafrost terrain and the production of greenhouse gases is a key factor for understanding climate change-carbon feedbacks. Previous studies have shown that SOM decomposition is mostly controlled by soil temperature, soil moisture, and carbon-nitrogen ratio (C:N). However, focus has generally been on site-specific processes and little is known about variations in the controls on SOM decomposition across Arctic sites. For assessing SOM decomposition, we retrieved 241 samples from 101 soil profiles across three contrasting Arctic regions and incubated them in the laboratory under aerobic conditions. We assessed soil carbon losses (C-loss) five times during a 1year incubation. The incubated material consisted of near-surface active layer (AL(NS)), subsurface active layer (AL(SS)), peat, and permafrost samples. Samples were analyzed for carbon, nitrogen, water content, C-13, N-15, and dry bulk density (DBD). While no significant differences were observed between total AL(SS) and permafrost C-loss over 1year incubation (2.32.4% and 2.51.5% C-loss, respectively), AL(NS) samples showed higher C-loss (7.94.2%). DBD was the best explanatory parameter for active layer C-loss across sites. Additionally, results of permafrost samples show that C:N ratio can be used to characterize initial C-loss between sites. This data set on the influence of abiotic parameter on microbial SOM decomposition can improve model simulations of Arctic soil CO2 production by providing representative mean values of CO2 production rates and identifying standard parameters or proxies for upscaling potential CO2 production from site to regional scales.