Background and AimsMicroorganisms are essential for carbon and nitrogen cycling in the active layer of permafrost regions, but the distribution and controlling factors of microbial functional genes across different land cover types and soil depths remain poorly understood. This gap hinders accurate predictions of carbon and nitrogen cycling dynamics under climate change. This study aims to explore how land cover type and soil depth influence microbial functional gene distribution in the Qinghai-Tibet Plateau's permafrost regions.MethodsSoil samples (0-50 cm) were collected from alpine wet meadows, alpine meadows, and alpine steppes. We analyzed the samples for physicochemical properties, microbial amplicon sequencing, and metagenomic sequencing. Correlation analyses were conducted between microbial community structure, functional genes, and environmental factors to identify the drivers of microbial carbon and nitrogen cycling.ResultsBacterial richness was 6.03% lower in steppe soils compared to wet meadow soils. Steppe soils exhibited the highest aerobic respiration potential, while deeper wet meadow soils had enhanced anaerobic carbon fixation potential and a higher abundance of carbon decomposition-related genes. Nitrogen assimilation was highest in steppe surface soils, whereas denitrification and ammonification were greatest in wet meadow soils. Carbon cycling potential was influenced by total soil carbon, nitrogen, phosphorus, and belowground biomass, while nitrogen cycling was driven by belowground biomass, soil moisture, and pH.ConclusionOur findings underscore the role of environmental factors in microbial functional gene distribution, providing new insights for modeling carbon and nitrogen cycling in alpine permafrost ecosystems under climate change.

Forest fires have significantly impacted the permafrost environment, and many research programs looking at this have been undertaken at higher latitudes. However, their impacts have not yet been systematically studied and evaluated in the northern part of northeast China at mid-latitudes. This study simultaneously measured ecological and geocryological changes at various sites in the boreal forest at different stages after forest fires (chronosequence approach) in the northern Da Xing'anling (Hinggan) Mountains, Northeast China. We obtained results through field investigations, monitoring and observations, remote sensing interpretations, and laboratory tests. The results show that forest fires have resulted in a decreased Normalized Difference Vegetation Index (NDVI) and soil moisture contents in the active layer, increased active layer thickness (ALT) and ground temperatures, and the release of a large amount of C and N from the soils in the active layer and at shallow depths of permafrost. NDVI and species biodiversity have gradually increased in the years since forest fires. However, the vegetation has not fully recovered to the climax community structures and functions of the boreal forest ecosystems. For example, ground temperatures, ALT, and soil C and N contents have been slowly recovering in the 30years after the forest fires, but they have not yet been restored to pre-fire levels. This study provides important scientific bases for assessment of the impacts of forest fires on the boreal forest ecosystems in permafrost regions, environmental restoration and management, and changes in the carbon stock of soils at shallow (<3m) depths in the Da Xingan'ling Mountains in northeast China.

The fate of the carbon stocked in permafrost following global warming and permafrost thaw is of major concern in view of the potential for increased CH4 and CO2 emissions from these soils. Complex carbon compound degradation and greenhouse gas emissions are due to soil microbial communities, but no comprehensive study has yet addressed their composition and functional potential in permafrost. Here, a 2-m deep permafrost sample and its overlying active layer soil were subjected to metagenomic sequencing, quantitative PCR (qPCR) and microarray analyses. The active layer soil and the 2-m permafrost microbial community structures were very similar, with Actinobacteria being the dominant phylum. The two samples also possessed a highly similar spectrum of functional genes, especially when compared with other already published metagenomes. Key genes related to methane generation, methane oxidation and organic matter degradation were highly diverse for both samples in the metagenomic libraries and some (for example, pmoA) showed relatively high abundance in qPCR assays. Genes related to nitrogen fixation and ammonia oxidation, which could have important roles following climatic change in these nitrogen-limited environments, showed low diversity but high abundance. The 2-m permafrost showed lower abundance and diversity for all the assessed genes and taxa. Experimental biases were also evaluated using qPCR and showed that the whole-community genome amplification technique used caused representational biases in the metagenomic libraries by increasing the abundance of Bacteroidetes and decreasing the abundance of Actinobacteria. This study describes for the first time the detailed functional potential of permafrost-affected soils. The ISME Journal (2010) 4, 1206-1214; doi: 10.1038/ismej.2010.41; published online 15 April 2010