Paddy soils undergo wet-dry cycles that greatly influence the behaviour and availability of nutrients, but also of potentially toxic elements (PTEs). This study assessed the quality of paddy soils (actively cultivated and abandoned) and rice (white, brown, and wild) produced in the Baixo Vouga Lagunar (BVL) region, central-north Portugal. Surface soils were analysed for physicochemical parameters and chemical compositions, alongside sequential selective chemical extraction to evaluate metal(loid) availability. Chemical analyses were also performed on interstitial- and irrigation waters, and rice grains. The BVL soils are very strongly to moderately acidic (pH = 4.4-5.8), with organic matter contents reaching up to 34%, and exhibit a wide range of electrical conductivity values. Abandoned rice fields generally show higher values of these parameters and evidence of saline water intrusion. Several sites showed As, Cu, Pb, and U concentrations exceeding Portuguese thresholds for agricultural soils. While Cu levels were similar in both cultivated and abandoned fields, the latter had higher contents of As, Pb, and U. A geogenic origin is envisaged for these metal(loid)s, though anthropogenic contributions cannot be excluded. Sequential selective chemical extraction showed that Pb and U are strongly associated with available fractions, whereas amorphous Fe-oxyhydroxides primarily support As and Cu. Nevertheless, porewaters and irrigation waters showed low concentrations of these PTEs, suggesting minimal mobilisation to water. Furthermore, translocation to rice grains was low, with concentrations well below European Commission limits, indicating that elevated PTEs in soils do not necessarily lead to toxic levels in rice, providing reassurance regarding food safety.