Understanding the spatiotemporal dynamics of microbial communities is essential for predicting their ecological roles and interactions with host plants. In a recent study, Wei and colleagues (Microbiol Spectr 13:e02097-24, 2024) investigated fungal diversity across multiple plant and soil compartments in rubber trees over two seasons and two geographically distinct regions in China. Their findings revealed that alpha diversity was primarily influenced by seasonal changes and physicochemical factors, while beta diversity exhibited a strong geographical pattern, shaped by leaf phosphorus and soil available potassium. These results highlight the role of environmental drivers in shaping within-community diversity, while other factors contribute to the differences between fungal communities across the soil-plant continuum. By distinguishing the effects of temporal and spatial factors, this study provides detailed insights into plant-associated microbiomes and emphasizes the need for further research on the functional implications of microbial diversity in the context of changing environmental and agricultural conditions.

The ectomycorrhizal fungi Tuber melanosporum Vittad. and Tuber aestivum Vittad. produce highly valuable truffles, but little is known about the soil fungal communities associated with these truffle species in places where they co-occur. Here, we compared soil fungal communities present in wild and planted truffle sites, in which T. melanosporum and T. aestivum coexist, in Mediterranean and temperate regions over three sampling seasons spanning from 2018 to 2019. We showed that soil fungal community composition and ectomycorrhizal species composition are driven by habitat type rather than climate regions. Also, we observed the influence of soil pH, organic matter content and C:N ratio structuring total and ectomycorrhizal fungal assemblages. Soil fungal communities in wild sites revealed more compositional variability than those of plantations. Greater soil fungal diversity was found in temperate compared to Mediterranean sites when considering all fungal guilds. Ectomycorrhizal diversity was significantly higher in wild sites compared to plantations. Greater mould abundance at wild sites than those on plantation was observed while tree species and seasonal effects were not significant predictors in fungal community structure. Our results suggested a strong influence of both ecosystem age and management on the fungal taxa composition in truffle habitats.

Global climate change has altered soil freeze-thaw (FT) patterns but less is known about the responses of soil microbial diversity, soil multifunctionality, and their relationship to FT events. Daxing'an Mountains in China, located in high-latitude permafrost ecosystems, are one of the most sensitive areas to climate change and FT patterns. Here, simulated FT conditions were used to determine the impact of FT events on soil microbial diversity and multifunctionality as well as to elucidate the relationships between bacterial and fungal diversity and multifunctionality. Community composition, alpha-diversity index, and co-occurrence network complexity of fungi significantly changed during FT events, whereas the same parameters did not exhibit significant alterations for bacteria. Soil fungal communities were more sensitive to FT events than soil bacterial communities. FT events significantly affected soil multifunctionality. A random forest analysis showed that the fungal diversity index was the main predictor of soil multifunctionality. Moreover, changes in soil abiotic factors also affected the relationship between soil microbial diversity and multifunctionality. Soil multifunctionality was also constrained by fungal community network complexity. Structural equation model showed that the FT amplitude and FT cycles exerted different impact paths on soil multifunctionality. The effect of FT cycles on soil multifunctionality (0.289) was greater than that of FT amplitude (0.080). As global climate change is expected to accelerate in the future, extension of the FT period in high-altitude and high-latitude regions may have a severe impact on soil function compared to extreme low temperatures caused by the presence of thin snow cover.