The performance of triboelectric polymers relies on their molecular structure. Therefore, investigating how to construct high-performance molecular structures of triboelectric polymers becomes imperative, yet the relationship between microscopic structural parameters and triboelectric performance remains unclear. In this study, the relationship is studied between dihedral angles of adjacent conjugated planes and triboelectric performance. Various polyimide monomers are synthesized to manipulate the conjugated dihedral angles within the molecular chains. Introducing larger dihedral angles in polyimides (PIs) reduces the conjugation between molecular chains, suppressing the formation of charge transfer complexes (CTCs), and widening the energy gap between molecular orbitals. With the increase in dihedral angles, the output performance improved by 100%. The surface charge density of 335 µC·m−2 is achieved through the synergistic effect of the high charge retention capability of the PI film and the high triboelectric properties of the corona-polarized fluorinated ethylene propylene (FEP). A large dihedral angle can form numerous deep traps and effectively prevent charge escaping while ensuring stable output. This study provides a feasible strategy for investigating the construction of high triboelectric performance molecular structures, enriching the understanding of how molecular structures influence the triboelectric properties of polymer materials and promote high-performance fluorine-free and environmentally friendly polymers.